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bsbdenovo-assembly [2017/11/29 02:01]
telatina
bsbdenovo-assembly [2017/11/29 02:04] (current)
telatina
Line 64: Line 64:
 </​code>​ </​code>​
 This will work if the suggested directory structure has been used. If you made customisations,​ tune the paths accordingly. This will work if the suggested directory structure has been used. If you made customisations,​ tune the paths accordingly.
 +Example output: 
 +<​code>​ 
 +file                             ​num_seqs ​ sum_len ​ min_len ​  ​avg_len ​ max_len ​ sum_gap ​     N50 
 +phage_51,​65,​77,​85/​contigs.fasta ​        ​3 ​ 114,​163 ​   5,534  38,​054.3 ​  ​62,​926 ​       0   ​62,​926 
 +phage_21,​29,​47,​59/​contigs.fasta ​        ​1 ​ 113,​939 ​ 113,​939 ​  ​113,​939 ​ 113,​939 ​       0  113,939 
 +phage_29,​47,​51,​59/​contigs.fasta ​        ​1 ​ 113,​939 ​ 113,​939 ​  ​113,​939 ​ 113,​939 ​       0  113,939 
 +phage_default/​contigs.fasta ​            ​1 ​ 113,​957 ​ 113,​957 ​  ​113,​957 ​ 113,​957 ​       0  113,957 
 +</​code>​